TSS: Rfhg 159880.1: Difference between revisions

Revision as of 09:11, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_159880.1
Species:	human
Chr:	chr13

Start:	40759046
End:	40759063
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2645395,EH38E1670375)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MRPS31
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	12136
Nearest PromoterID:	NM_005830
Entrez ID:	10240
Nearest Unigene:	Hs.596607
Nearest Refseq:	NM_005830
Nearest Ensembl:	ENSG00000102738
Gene Name:	MRPS31
Gene Alias:	IMOGN38\|MRP-S31\|S31mt
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.555556
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000102738
 |nearest_promoter_id=NM_005830
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=40759046