TSS: Rfhg 159923.1: Difference between revisions

Revision as of 09:11, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_159923.1
TSS ID(Version3):	hg_136954.1 hg_136955.1
Species:	human
Chr:	chr13

Start:	41061351
End:	41061403
Strand:	-

Source datasets

FANTOM5|PRJNA4843412|PRJNA615891|PRJNA548673|DRA013844

Protocol

CAGE|NETCAGE|SLIC_CAGE|ReCappable-seq

TSS cluster detected^*

6

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2645660,EH38E1670598)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001370329.1:0 NM_001370330.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ELF1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	9
Nearest PromoterID:	NM_001370329
Entrez ID:	1997
Nearest Unigene:	Hs.135646
Nearest Refseq:	NM_172373
Nearest Ensembl:	ENSG00000120690
Gene Name:	ELF1
Gene Alias:	EFTUD1\|RIA1
Gene Type:	protein-coding
CpG%:	0.096154
GC%:	0.641509
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}NETCAGE{{!}}SLIC_CAGE{{!}}ReCappable-seq
 |nearest_ensembl=ENSG00000120690
 |nearest_promoter_id=NM_001370329
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA4843412{{!}}PRJNA615891{{!}}PRJNA548673{{!}}DRA013844
 |species=human
 |start=41061351
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=NM_001370329.1 NM_001370330.1
+|tss_cluster_detected=6
 |tss_id=rfhg_159923.1
 |tss_id_v3=hg_136954.1;hg_136955.1