TSS: Rfhg 161873.1: Difference between revisions

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|gene_type=ncRNA
|gene_type=ncRNA
|hgnc_mgi_id=
|hgnc_mgi_id=
|methods=CAGE
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=NR_158368
|nearest_promoter_id=NR_158368
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|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=94713436
|start=94713436

Latest revision as of 09:47, 7 December 2023

Basic information about the TSS


TSS ID:rfhg_161873.1
Species:human
Chr:chr13
Start:94713436
End:94713453
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:pELS (EH38D2679980,EH38E1689658)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Transcript_name:NR_158368.1 LF335644 MA571221
Distance:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Gene_name:LOC112268114
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:-1
Nearest PromoterID:NR_158368
Entrez ID:112268114
Nearest Unigene:Hs.741900
Nearest Refseq:NR_158368
Nearest Ensembl:
Gene Name:LOC112268114
Gene Alias:-
Gene Description:uncharacterized LOC112268114
Gene Type:ncRNA
CpG%:0.000000
GC%:0.611111
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):