TSS: Rfhg 166322.1: Difference between revisions
From referenceTSS
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|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:19842 | |hgnc_mgi_id=HGNC:19842 | ||
|methods=CAGE{{!}}NETCAGE{{!}}C1CAGE{{!}}oligo_capping{{!}}ReCappable-seq | |||
|nearest_ensembl=ENSG00000186615 | |nearest_ensembl=ENSG00000186615 | ||
|nearest_promoter_id=NR_027123 | |nearest_promoter_id=NR_027123 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282{{!}}PRJNA401781{{!}}PRJNA548673 | |||
|species=human | |species=human | ||
|start=55580077 | |start=55580077 |
Latest revision as of 11:10, 7 December 2023
Basic information about the TSS
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Source datasets | FANTOM5|PRJNA4843412|DRA013844|PRJDB5282|PRJNA401781 |PRJNA548673 | |||||||||||||||
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Protocol | CAGE|NETCAGE|C1CAGE|oligo_capping|ReCappable-seq | |||||||||||||||
TSS cluster detected* | 7 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D2721466,EH38E1716255) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -15 |
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Nearest PromoterID: | NR_027123 |
Entrez ID: | 100129075 |
Nearest Unigene: | Hs.633724 |
Nearest Refseq: | NR_027123 |
Nearest Ensembl: | ENSG00000186615 |
Gene Name: | KTN1-AS1 |
Gene Alias: | C14orf33|MYCLo-3 |
Gene Description: | KTN1 antisense RNA 1 |
Gene Type: | ncRNA |
CpG%: | 0.163934 |
GC%: | 0.774194 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.