TSS: Rfhg 168339.1: Difference between revisions

Revision as of 11:46, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_168339.1
Species:	human
Chr:	chr14

Start:	75523862
End:	75523864
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2738858,EH38E1728788)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	BATF
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1394
Nearest PromoterID:	NM_006399
Entrez ID:	10538
Nearest Unigene:	Hs.509964
Nearest Refseq:	NM_006399
Nearest Ensembl:	ENSG00000156127
Gene Name:	BATF
Gene Alias:	B-ATF\|BATF1\|SFA-2\|SFA2
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000156127
 |nearest_promoter_id=NM_006399
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=75523862