TSS: Rfhg 169858.1: Difference between revisions

Revision as of 12:14, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_169858.1
TSS ID(Version3):	hg_141333.1 hg_141332.1
Species:	human
Chr:	chr14

Start:	96204815
End:	96204917
Strand:	+

Source datasets

FANTOM5|PRJNA4843412|DRA013844|PRJDB5282

Protocol

CAGE|NETCAGE|C1CAGE

TSS cluster detected^*

4

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2755774,EH38E1739677)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000539359.1:0 ENST00000554311.2:0 AK311049:0 AK299316:0 KJ950627:0 KJ950628:0 M88714:0
GeneID:	623 624
HGNC/MGI_ID:	HGNC:1029 HGNC:1030
UniProt_ID:	B4DRL4 P30411
Nearer transcript ids and distances:

Gene_name:	BDKRB2
Gene_symbol:	BDKRB1 BDKRB2
Gene_synonyms:	B1BKR BK-2 BKR1 bradyb1
Gene_source:	HGNC:1029 HGNC:1030

TATA-Box annotation

Distance to TSS:	68
Nearest PromoterID:	NM_000623
Entrez ID:	624
Nearest Unigene:	Hs.654542
Nearest Refseq:	NM_000623
Nearest Ensembl:	ENSG00000168398
Gene Name:	BDKRB2
Gene Alias:	B2R\|BK-2\|BK2\|BKR2\|BRB2
Gene Type:	protein-coding
CpG%:	0.058824
GC%:	0.679612
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:1029 HGNC:1030
+|methods=CAGE{{!}}NETCAGE{{!}}C1CAGE
 |nearest_ensembl=ENSG00000168398
 |nearest_promoter_id=NM_000623
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282
 |species=human
 |start=96204815
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000539359.1 ENST00000554311.2 AK311049 AK299316 KJ950627 KJ950628 M88714
+|tss_cluster_detected=4
 |tss_id=rfhg_169858.1
 |tss_id_v3=hg_141333.1;hg_141332.1