TSS: Rfhg 171625.1: Difference between revisions

Latest revision as of 12:45, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_171625.1
Species:	human
Chr:	chr15

Start:	25228967
End:	25228971
Strand:	+

Source datasets

FANTOM5|DBTSS

Protocol

CAGE|TSS-seq

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000364079.1
Distance:	0
GeneID:	100033806
HGNC/MGI_ID:	HGNC:33051
UniProt_ID:

Gene_name:	SNORD115-32
Gene_symbol:	SNORD115-32
Gene_synonyms:	HBII-52-32
Gene_source:	HGNC:33051

TATA-Box annotation

Distance to TSS:	2
Nearest PromoterID:	NR_003347
Entrez ID:	100033806
Nearest Unigene:
Nearest Refseq:	NR_003347
Nearest Ensembl:	ENSG00000200949
Gene Name:	SNORD115-32
Gene Alias:	HBII-52-32
Gene Description:	small nucleolar RNA, C/D box 115-32
Gene Type:	snoRNA
CpG%:	0.000000
GC%:	0.800000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=snoRNA
 |hgnc_mgi_id=HGNC:33051
+|methods=CAGE{{!}}TSS-seq
 |nearest_ensembl=ENSG00000200949
 |nearest_promoter_id=NR_003347
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DBTSS
 |species=human
 |start=25228967