TSS: Rfhg 175001.1: Difference between revisions

Revision as of 13:45, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_175001.1
TSS ID(Version3):	hg_226048.1
Species:	human
Chr:	chr15

Start:	62739371
End:	62739462
Strand:	+

Source datasets

FANTOM5|DRA013844|PRJDB5282

Protocol

CAGE|C1CAGE

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2797606,EH38E1768342)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MIR190A
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-84541
Nearest PromoterID:	NR_029709
Entrez ID:	406965
Nearest Unigene:
Nearest Refseq:	NR_029709
Nearest Ensembl:	ENSG00000211137
Gene Name:	MIR190A
Gene Alias:	MIR190\|MIRN190\|hsa-mir-190a\|miR-190\|mir-190a
Gene Type:	ncRNA
CpG%:	0.010989
GC%:	0.619565
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE{{!}}C1CAGE
 |nearest_ensembl=ENSG00000211137
 |nearest_promoter_id=NR_029709
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DRA013844{{!}}PRJDB5282
 |species=human
 |start=62739371