TSS: Rfhg 175179.1: Difference between revisions

Revision as of 13:48, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_175179.1
Species:	human
Chr:	chr15

Start:	63600737
End:	63600814
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2798727,EH38E1769300)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000649220.2:0 ENST00000668026.1:0 ENST00000657335.1:0 ENST00000656865.1:0 ENST00000560962.6:0 ENST00000558831.5:0 ENST00000559737.6:0 ENST00000560622.5:0 ENST00000561191.1:0 BC036918:0 BC017581:0 AK093077:0
GeneID:	100130855
HGNC/MGI_ID:	HGNC:44140
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	USP3-AS1
Gene_symbol:	USP3-AS1
Gene_synonyms:
Gene_source:	HGNC:44140

TATA-Box annotation

Distance to TSS:	52
Nearest PromoterID:	NR_034080
Entrez ID:	100130855
Nearest Unigene:	Hs.631163
Nearest Refseq:	NR_034080
Nearest Ensembl:	ENSG00000259248
Gene Name:	USP3-AS1
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.155844
GC%:	0.730769
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:44140
+|methods=CAGE
 |nearest_ensembl=ENSG00000259248
 |nearest_promoter_id=NR_034080
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=63600737