TSS: Rfhg 177318.1: Difference between revisions

Revision as of 14:29, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_177318.1
TSS ID(Version3):	hg_151249.1
Species:	human
Chr:	chr15

Start:	82262660
End:	82262749
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

13

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2817295,EH38E1782900)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000359445.7:0 ENST00000268206.12:0 ENST00000561389.1:0 ENST00000557844.1:0 BX538332:0 AK300348:0 AK056656:0
GeneID:	79631
HGNC/MGI_ID:	HGNC:25789
UniProt_ID:	B3KPR5 H0YK75 H0YNW8 Q7Z2Z2
Nearer transcript ids and distances:

Gene_name:	EFL1
Gene_symbol:	EFL1
Gene_synonyms:	FAM42A FLJ13119 HsT19294 RIA1
Gene_source:	HGNC:25789

TATA-Box annotation

Distance to TSS:	30
Nearest PromoterID:	NM_024580
Entrez ID:	79631
Nearest Unigene:	Hs.459114
Nearest Refseq:	NM_024580
Nearest Ensembl:	ENSG00000140598
Gene Name:	EFL1
Gene Alias:	EFTUD1\|FAM42A\|HsT19294\|RIA1\|SDS2
Gene Type:	protein-coding
CpG%:	0.146067
GC%:	0.722222
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:25789
+|methods=CAGE{{!}}TSS_database{{!}}NETCAGE{{!}}C1CAGE{{!}}TIF-seq2{{!}}SLIC_CAGE{{!}}RAMPAGE{{!}}ReCappable-seq
 |nearest_ensembl=ENSG00000140598
 |nearest_promoter_id=NM_024580
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}ENCODE{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282{{!}}PRJNA615891{{!}}PRJNA548673{{!}}PRJNA401781
 |species=human
 |start=82262660