TSS: Rfhg 177356.1: Difference between revisions

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|gene_type=ncRNA
|gene_type=ncRNA
|hgnc_mgi_id=HGNC:27523
|hgnc_mgi_id=HGNC:27523
|methods=CAGE
|nearest_ensembl=ENSG00000259462
|nearest_ensembl=ENSG00000259462
|nearest_promoter_id=NR_046096
|nearest_promoter_id=NR_046096
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=82647801
|start=82647801

Revision as of 14:30, 7 December 2023

Basic information about the TSS

TSS ID:rfhg_177356.1
Species:human
Chr:chr15
Start:82647801
End:82647813
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000560650.1:-31
BC035360:-31
GeneID:283692
HGNC/MGI_ID:HGNC:27523
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:CPEB1-AS1
    Gene_symbol:CPEB1-AS1
    Gene_synonyms:
    Gene_source:HGNC:27523



    TATA-Box annotation

    Distance to TSS:37
    Nearest PromoterID:NR_046096
    Entrez ID:283692
    Nearest Unigene:Hs.578667
    Nearest Refseq:NR_046096
    Nearest Ensembl:ENSG00000259462
    Gene Name:CPEB1-AS1
    Gene Alias:-
    Gene Type:ncRNA
    CpG%:0.083333
    GC%:0.615385
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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