TSS: Rfhg 189368.1: Difference between revisions

Latest revision as of 18:10, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_189368.1
TSS ID(Version3):	hg_159281.1
Species:	human
Chr:	chr17

Start:	7583812
End:	7583863
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

15

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2906081,EH38E1844523)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000571822.5 ENST00000396501.8 ENST00000571391.5 ENST00000578267.5 ENST00000585188.5 ENST00000359822.10 ENST00000580708.5 ENST00000580834.5 ENST00000572836.5 ENST00000577088.5 ENST00000250124.11 ENST00000584378.5 ENST00000423172.6 ENST00000576066.5 ENST00000584479.5 ENST00000572719.5 ENST00000579445.5 BC001898 AK225401 AK075299 AF038961 AK027742 AK297691 AK314527 AK297001 AK225432 AK055923 AK300083 AK300140 CU674920 HQ448685 KR709838 KR709839 KR709840 KU178478 KU178479 KU178480 DQ499597
Distance:	0
GeneID:	9526
HGNC/MGI_ID:	HGNC:7207
UniProt_ID:	A0A0S2Z4T4 A0A0S2Z4W8 B2RB74 B4DTB4 I3L1D2 I3L295 I3L4E0 J3KT75 J3QRD5 J3QS48 J3QW43 O75352 Q1HDL3 Q96K24 Q96N63

Gene_name:	MPDU1
Gene_symbol:	MPDU1
Gene_synonyms:	CDGIf Lec35 PQLC5 SL15 SLC66A5
Gene_source:	HGNC:7207

TATA-Box annotation

Distance to TSS:	-15
Nearest PromoterID:	NM_004870
Entrez ID:	9526
Nearest Unigene:	Hs.246381
Nearest Refseq:	NM_004870
Nearest Ensembl:	ENSG00000129255
Gene Name:	MPDU1
Gene Alias:	CDGIF\|HBEBP2BPA\|Lec35\|My008\|PP3958\|PQLC5\|SL15\|SLC66A5
Gene Description:	mannose-P-dolichol utilization defect 1
Gene Type:	protein-coding
CpG%:	0.058824
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:7207
+|methods=CAGE{{!}}TSS_database{{!}}TSS-seq{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}C1CAGE{{!}}NETCAGE{{!}}RAMPAGE
 |nearest_ensembl=ENSG00000129255
 |nearest_promoter_id=NM_004870
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DBTSS{{!}}DRA000914{{!}}ENCODE{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=7583812
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000571822.5 ENST00000396501.8 ENST00000571391.5 ENST00000578267.5 ENST00000585188.5 ENST00000359822.10 ENST00000580708.5 ENST00000580834.5 ENST00000572836.5 ENST00000577088.5 ENST00000250124.11 ENST00000584378.5 ENST00000423172.6 ENST00000576066.5 ENST00000584479.5 ENST00000572719.5 ENST00000579445.5 BC001898 AK225401 AK075299 AF038961 AK027742 AK297691 AK314527 AK297001 AK225432 AK055923 AK300083 AK300140 CU674920 HQ448685 KR709838 KR709839 KR709840 KU178478 KU178479 KU178480 DQ499597
+|tss_cluster_detected=15
 |tss_id=rfhg_189368.1
 |tss_id_v3=hg_159281.1