TSS: Rfhg 190644.1: Difference between revisions

Revision as of 18:33, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_190644.1
Species:	human
Chr:	chr17

Start:	18260559
End:	18260671
Strand:	+

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2915414,EH38E1850975)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000578174.5:0 ENST00000395704.8:0 ENST00000395703.8:0 ENST00000577216.1:0 ENST00000578621.5:0 ENST00000579341.5:0 ENST00000583745.1:0 ENST00000323019.9:0 AK128310:0
GeneID:	125170
HGNC/MGI_ID:	HGNC:17920
UniProt_ID:	A8MT25 J3KTJ4 J3QR30 K7EKV6 Q96C03
Nearer transcript ids and distances:

Gene_name:	MIEF2
Gene_symbol:	MIEF2
Gene_synonyms:	MGC23130 MiD49
Gene_source:	HGNC:17920

TATA-Box annotation

Distance to TSS:	-47
Nearest PromoterID:	NM_139162
Entrez ID:	125170
Nearest Unigene:	Hs.655555
Nearest Refseq:	NM_139162
Nearest Ensembl:	ENSG00000177427
Gene Name:	MIEF2
Gene Alias:	MID49\|SMCR7
Gene Type:	protein-coding
CpG%:	0.089286
GC%:	0.654867
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:17920
+|methods=NETCAGE{{!}}CAGE
 |nearest_ensembl=ENSG00000177427
 |nearest_promoter_id=NM_139162
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844
 |species=human
 |start=18260559
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000578174.5 ENST00000395704.8 ENST00000395703.8 ENST00000577216.1 ENST00000578621.5 ENST00000579341.5 ENST00000583745.1 ENST00000323019.9 AK128310
-|tss_cluster_detected=4
+|tss_cluster_detected=2
 |tss_id=rfhg_190644.1
 |tss_score=1
 |uniprot_id=A8MT25 J3KTJ4 J3QR30 K7EKV6 Q96C03
 }}