TSS: Rfhg 190732.1: Difference between revisions

Revision as of 18:34, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_190732.1
Species:	human
Chr:	chr17

Start:	19237398
End:	19237398
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2915843,EH38E1851265)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000395628.6:-1 AK024115:-1
GeneID:	22905
HGNC/MGI_ID:	HGNC:18639
UniProt_ID:	F6PQP6
Nearer transcript ids and distances:

Gene_name:	EPN2
Gene_symbol:	EPN2
Gene_synonyms:	EHB21 KIAA1065
Gene_source:	HGNC:18639

TATA-Box annotation

Distance to TSS:	21
Nearest PromoterID:	NM_148921
Entrez ID:	22905
Nearest Unigene:	Hs.743983
Nearest Refseq:	NM_014964
Nearest Ensembl:	ENSG00000072134
Gene Name:	EPN2
Gene Alias:	EHB21
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:18639
+|methods=TSS_database
 |nearest_ensembl=ENSG00000072134
 |nearest_promoter_id=NM_148921
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=19237398