TSS: Rfhg 191065.1: Difference between revisions

Revision as of 18:41, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_191065.1
TSS ID(Version3):	hg_164950.1
Species:	human
Chr:	chr17

Start:	27089207
End:	27089289
Strand:	-

Source datasets

FANTOM5|ENCODE|PRJNA597322|PRJNA401781|PRJNA4843412

Protocol

CAGE|STRIPE-seq|RAMPAGE|oligo_capping|NETCAGE

TSS cluster detected^*

7

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2918366,EH38E1852954)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_135673.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC105371703
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-7
Nearest PromoterID:	NR_135673
Entrez ID:	105371703
Nearest Unigene:	Hs.649918
Nearest Refseq:	NR_135673
Nearest Ensembl:
Gene Name:	LOC105371703
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.036585
GC%:	0.493976
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE{{!}}STRIPE-seq{{!}}RAMPAGE{{!}}oligo_capping{{!}}NETCAGE
 |nearest_ensembl=
 |nearest_promoter_id=NR_135673
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}ENCODE{{!}}PRJNA597322{{!}}PRJNA401781{{!}}PRJNA4843412
 |species=human
 |start=27089207
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=NR_135673.1
+|tss_cluster_detected=7
 |tss_id=rfhg_191065.1
 |tss_id_v3=hg_164950.1