TSS: Rfhg 194021.1: Difference between revisions

Revision as of 19:34, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_194021.1
TSS ID(Version3):	hg_166192.1
Species:	human
Chr:	chr17

Start:	42824249
End:	42824302
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

14

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2933065,EH38E1863903)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000361523.8:0 ENST00000617806.4:0 ENST00000590099.6:0 ENST00000438274.7:0 ENST00000543382.6:0 ENST00000593205.5:0 ENST00000591085.1:0 ENST00000585515.5:0 ENST00000591307.5:0 ENST00000593112.1:0 HM005628:0 BC010276:0 BX647788:0 AF139131:0 AK298619:0 AK299616:0 AK223411:0 AK312651:0
GeneID:	8678
HGNC/MGI_ID:	HGNC:1034
UniProt_ID:	A0A024R1X5 B4DQ36 B4DS82 E7EV84 K7EKK2 K7EN35 Q53F78
Nearer transcript ids and distances:

Gene_name:	BECN1
Gene_symbol:	BECN1
Gene_synonyms:	ATG6 VPS30
Gene_source:	HGNC:1034

TATA-Box annotation

Distance to TSS:	7
Nearest PromoterID:	NM_001313998
Entrez ID:	8678
Nearest Unigene:	Hs.716464
Nearest Refseq:	NM_003766
Nearest Ensembl:	ENSG00000126581
Gene Name:	BECN1
Gene Alias:	ATG6\|VPS30\|beclin1
Gene Type:	protein-coding
CpG%:	0.132075
GC%:	0.648148
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:1034
+|methods=CAGE{{!}}TSS_database{{!}}TSS-seq{{!}}RAMPAGE{{!}}TIF-seq2{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}STRIPE-seq{{!}}C1CAGE{{!}}NETCAGE
 |nearest_ensembl=ENSG00000126581
 |nearest_promoter_id=NM_001313998
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DBTSS{{!}}PRJNA401781{{!}}PRJNA615891{{!}}PRJNA548673{{!}}PRJNA597322{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=42824249