TSS: Rfhg 194669.1: Difference between revisions

Revision as of 19:47, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_194669.1
TSS ID(Version3):	hg_166512.1 hg_166511.1
Species:	human
Chr:	chr17

Start:	45161490
End:	45161545
Strand:	-

Source datasets

FANTOM5|PRJNA548673|PRJNA615891|PRJNA4843412|DRA013844

Protocol

CAGE|ReCappable-seq|SLIC_CAGE|NETCAGE

TSS cluster detected^*

6

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2935501,EH38E1865811)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000589950.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	HEXIM2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-328
Nearest PromoterID:	NM_001303441
Entrez ID:	124790
Nearest Unigene:	Hs.56382
Nearest Refseq:	NM_144608
Nearest Ensembl:	ENSG00000168517
Gene Name:	HEXIM2
Gene Alias:	L3
Gene Type:	protein-coding
CpG%:	0.109091
GC%:	0.660714
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}NETCAGE
 |nearest_ensembl=ENSG00000168517
 |nearest_promoter_id=NM_001303441
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=45161490
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000589950.1
+|tss_cluster_detected=6
 |tss_id=rfhg_194669.1
 |tss_id_v3=hg_166512.1;hg_166511.1