TSS: Rfhg 194870.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 21: Line 21:
|gene_type=pseudo
|gene_type=pseudo
|hgnc_mgi_id=HGNC:8016
|hgnc_mgi_id=HGNC:8016
|methods=TSS_database{{!}}CAGE
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=NR_033799
|nearest_promoter_id=NR_033799
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=EPD{{!}}DRA000914
|species=human
|species=human
|start=46590734
|start=46590734

Revision as of 19:51, 7 December 2023

Basic information about the TSS

TSS ID:rfhg_194870.1
Species:human
Chr:chr17
Start:46590734
End:46590741
Strand:+
Source datasetsEPD|DRA000914
ProtocolTSS_database|CAGE
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AK294727:0
AK294886:0
AK299786:0
AK294001:0
AF102846:0
BC030613:0
GeneID:4905
HGNC/MGI_ID:HGNC:8016
UniProt_ID:B4DGR3 B4DH19 B4DSK5
Nearer transcript ids and distances:
    Gene_name:NSFP1
    Gene_symbol:NSF
    Gene_synonyms:SEC18 SKD2
    Gene_source:HGNC:8016



    TATA-Box annotation

    Distance to TSS:3
    Nearest PromoterID:NR_033799
    Entrez ID:728806
    Nearest Unigene:Hs.735097
    Nearest Refseq:NR_033799
    Nearest Ensembl:
    Gene Name:NSFP1
    Gene Alias:NSFP
    Gene Type:pseudo
    CpG%:0.142857
    GC%:0.750000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
    Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_194870.1&oldid=2847710"