TSS: Rfhg 209907.1: Difference between revisions

Revision as of 00:32, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_209907.1
Species:	human
Chr:	chr19

Start:	19663665
End:	19663693
Strand:	-

Source datasets

PRJNA548673|PRJNA401781|PRJNA615891|PRJNA4843412|DRA013844

Protocol

CAGE|ReCappable-seq|SLIC_CAGE|NETCAGE

TSS cluster detected^*

6

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3049606,EH38E1945467)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000357324.11:0 ENST00000487364.1:0 AK056420:0 AB385506:0
GeneID:	57130
HGNC/MGI_ID:	HGNC:24215
UniProt_ID:	A0A024R7N2
Nearer transcript ids and distances:

Gene_name:	ATP13A1
Gene_symbol:	ATP13A1
Gene_synonyms:	CGI-152 FLJ31858 KIAA1825
Gene_source:	HGNC:24215

TATA-Box annotation

Distance to TSS:	-3
Nearest PromoterID:	NM_020410
Entrez ID:	57130
Nearest Unigene:	Hs.501794
Nearest Refseq:	NM_020410
Nearest Ensembl:	ENSG00000105726
Gene Name:	ATP13A1
Gene Alias:	ATP13A\|CGI-152
Gene Type:	protein-coding
CpG%:	0.142857
GC%:	0.620690
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:24215
+|methods=CAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}NETCAGE
 |nearest_ensembl=ENSG00000105726
 |nearest_promoter_id=NM_020410
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA548673{{!}}PRJNA401781{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=19663665
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000357324.11 ENST00000487364.1 AK056420 AB385506
-|tss_cluster_detected=8
+|tss_cluster_detected=6
 |tss_id=rfhg_209907.1
 |tss_score=1
 |uniprot_id=A0A024R7N2
 }}