TSS: Rfhg 211826.1: Difference between revisions

Revision as of 01:07, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_211826.1
Species:	human
Chr:	chr19

Start:	38930917
End:	38930992
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

11

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3060601,EH38E1952942)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000598734.1:0 ENST00000308018.9:0 ENST00000407800.2:0 Y11681:0 BC007499:0
GeneID:	6183
HGNC/MGI_ID:	HGNC:10380
UniProt_ID:	A0A024R0H2
Nearer transcript ids and distances:

Gene_name:	MRPS12
Gene_symbol:	MRPS12
Gene_synonyms:	RPS12 RPSM12
Gene_source:	HGNC:10380

TATA-Box annotation

Distance to TSS:	0
Nearest PromoterID:	NM_033363
Entrez ID:	6183
Nearest Unigene:	Hs.411125
Nearest Refseq:	NM_021107
Nearest Ensembl:	ENSG00000128626
Gene Name:	MRPS12
Gene Alias:	MPR-S12\|MT-RPS12\|RPMS12\|RPS12\|RPSM12
Gene Type:	protein-coding
CpG%:	0.080000
GC%:	0.605263
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:10380
+|methods=NETCAGE{{!}}CAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}C1CAGE{{!}}RAMPAGE{{!}}STRIPE-seq{{!}}TIF-seq2
 |nearest_ensembl=ENSG00000128626
 |nearest_promoter_id=NM_033363
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJDB5282{{!}}PRJNA597322
 |species=human
 |start=38930917
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000598734.1 ENST00000308018.9 ENST00000407800.2 Y11681 BC007499
-|tss_cluster_detected=13
+|tss_cluster_detected=11
 |tss_id=rfhg_211826.1
 |tss_score=1
 |uniprot_id=A0A024R0H2
 }}