TSS: Rfhg 212655.1: Difference between revisions

Revision as of 01:23, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_212655.1
Species:	human
Chr:	chr19

Start:	41928494
End:	41928514
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3063217,EH38E1955138)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_173095.1:0 NR_135626.2:0 NR_173096.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC390937
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	217
Nearest PromoterID:	NM_001365103
Entrez ID:	390937
Nearest Unigene:	Hs.590950
Nearest Refseq:	NM_001365103
Nearest Ensembl:	ENSG00000268041
Gene Name:	LOC390937
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.050000
GC%:	0.619048
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000268041
 |nearest_promoter_id=NM_001365103
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=41928494