TSS: Rfhg 216173.1: Difference between revisions

Revision as of 02:30, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_216173.1
Species:	human
Chr:	chr19

Start:	54850418
End:	54850418
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3074853,EH38E1964374)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000326321.7:25 AF262967:25 AF263617:25
GeneID:	3812
HGNC/MGI_ID:	HGNC:6339
UniProt_ID:	A0A0U1WNF3
Nearer transcript ids and distances:

Gene_name:	KIR3DL2
Gene_symbol:	KIR3DL2
Gene_synonyms:	CD158K cl-5 nkat4 nkat4a nkat4b
Gene_source:	HGNC:6339

TATA-Box annotation

Distance to TSS:	-25
Nearest PromoterID:	NM_001242867
Entrez ID:	3812
Nearest Unigene:	Hs.645228
Nearest Refseq:	NM_006737
Nearest Ensembl:	ENSG00000240403
Gene Name:	KIR3DL2
Gene Alias:	3DL2\|CD158K\|KIR-3DL2\|NKAT-4\|NKAT4\|NKAT4B\|p140
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:6339
+|methods=TSS_database
 |nearest_ensembl=ENSG00000240403
 |nearest_promoter_id=NM_001242867
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=54850418