TSS: Rfhg 220460.1: Difference between revisions

Latest revision as of 03:45, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_220460.1
TSS ID(Version3):	hg_184599.1
Species:	human
Chr:	chr20

Start:	38926401
End:	38926424
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

10

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3298382,EH38E2111958)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000619850.2 AK303860
Distance:	0
GeneID:	81610
HGNC/MGI_ID:	HGNC:16122
UniProt_ID:	Q9H4H8

Gene_name:	FAM83D
Gene_symbol:	FAM83D
Gene_synonyms:	CHICA dJ616B8.3
Gene_source:	HGNC:16122

TATA-Box annotation

Distance to TSS:	-5
Nearest PromoterID:	NM_030919
Entrez ID:	81610
Nearest Unigene:	Hs.726442
Nearest Refseq:	NM_030919
Nearest Ensembl:	ENSG00000101447
Gene Name:	FAM83D
Gene Alias:	C20orf129\|CHICA\|dJ616B8.3
Gene Description:	family with sequence similarity 83 member D
Gene Type:	protein-coding
CpG%:	0.130435
GC%:	0.625000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:16122
+|methods=CAGE{{!}}TSS_database{{!}}NETCAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2
 |nearest_ensembl=ENSG00000101447
 |nearest_promoter_id=NM_030919
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}ENCODE{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891
 |species=human
 |start=38926401
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000619850.2 AK303860
+|tss_cluster_detected=10
 |tss_id=rfhg_220460.1
 |tss_id_v3=hg_184599.1