TSS: Rfhg 220614.1: Difference between revisions

Revision as of 03:48, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_220614.1
TSS ID(Version3):	hg_184673.1
Species:	human
Chr:	chr20

Start:	43590920
End:	43591008
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

8

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3301992,EH38E2114162)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000373030.8:0 ENST00000373039.4:0 BC039831:0 AK301915:0 AF151811:0
GeneID:	51098
HGNC/MGI_ID:	HGNC:15901
UniProt_ID:	B4DXC7 Q9Y366
Nearer transcript ids and distances:

Gene_name:	IFT52
Gene_symbol:	IFT52
Gene_synonyms:	CGI-53 NGD2 NGD5 dJ1028D15.1
Gene_source:	HGNC:15901

TATA-Box annotation

Distance to TSS:	27
Nearest PromoterID:	NM_001323580
Entrez ID:	51098
Nearest Unigene:	Hs.444332
Nearest Refseq:	NM_016004
Nearest Ensembl:	ENSG00000101052
Gene Name:	IFT52
Gene Alias:	C20orf9\|CGI-53\|NGD2\|NGD5
Gene Type:	protein-coding
CpG%:	0.147727
GC%:	0.730337
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:15901
+|methods=CAGE{{!}}TSS_database{{!}}RAMPAGE{{!}}oligo_capping{{!}}NETCAGE{{!}}C1CAGE
 |nearest_ensembl=ENSG00000101052
 |nearest_promoter_id=NM_001323580
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}PRJNA401781{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282
 |species=human
 |start=43590920