TSS: Rfhg 222364.1: Difference between revisions

Revision as of 04:19, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_222364.1
Species:	human
Chr:	chr20

Start:	54169721
End:	54169804
Strand:	-

Source datasets

PRJNA548673

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3312703,EH38E2122797)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CYP24A1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	4224
Nearest PromoterID:	NM_001128915
Entrez ID:	1591
Nearest Unigene:	Hs.89663
Nearest Refseq:	NM_000782
Nearest Ensembl:	ENSG00000019186
Gene Name:	CYP24A1
Gene Alias:	CP24\|CYP24\|HCAI\|HCINF1\|P450-CC24
Gene Type:	protein-coding
CpG%:	0.024096
GC%:	0.392857
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000019186
 |nearest_promoter_id=NM_001128915
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA548673
 |species=human
 |start=54169721