TSS: Rfhg 22270.1: Difference between revisions

Revision as of 04:25, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_22270.1
Species:	human
Chr:	chr1

Start:	247172009
End:	247172021
Strand:	-

Source datasets

EPD|DRA000914

Protocol

TSS_database|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000543802.3:0 ENST00000340684.10:0 AK054647:0
GeneID:	7678
HGNC/MGI_ID:	HGNC:12907
UniProt_ID:	Q15973
Nearer transcript ids and distances:

Gene_name:	ZNF124
Gene_symbol:	ZNF124
Gene_synonyms:	HZF-16 HZF16
Gene_source:	HGNC:12907

TATA-Box annotation

Distance to TSS:	2
Nearest PromoterID:	NM_001297568
Entrez ID:	7678
Nearest Unigene:	Hs.421238
Nearest Refseq:	NM_003431
Nearest Ensembl:	ENSG00000196418
Gene Name:	ZNF124
Gene Alias:	HZF-16\|HZF16\|ZK7
Gene Type:	protein-coding
CpG%:	0.083333
GC%:	0.692308
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:12907
+|methods=TSS_database{{!}}CAGE
 |nearest_ensembl=ENSG00000196418
 |nearest_promoter_id=NM_001297568
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD{{!}}DRA000914
 |species=human
 |start=247172009