TSS: Rfhg 229477.1: Difference between revisions

Revision as of 06:20, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_229477.1
Species:	human
Chr:	chr22

Start:	35066136
End:	35066136
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3367356,EH38E2160584)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000308700.6:0 CR749372:0
GeneID:	91464
HGNC/MGI_ID:	HGNC:28084
UniProt_ID:	Q2M1V0
Nearer transcript ids and distances:

Gene_name:	ISX
Gene_symbol:	ISX
Gene_synonyms:	RAXLX
Gene_source:	HGNC:28084

TATA-Box annotation

Distance to TSS:	-22
Nearest PromoterID:	NM_001303508
Entrez ID:	91464
Nearest Unigene:	Hs.567637
Nearest Refseq:	NM_001008494
Nearest Ensembl:	ENSG00000175329
Gene Name:	ISX
Gene Alias:	Pix-1\|RAXLX
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:28084
+|methods=TSS_database
 |nearest_ensembl=ENSG00000175329
 |nearest_promoter_id=NM_001303508
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=35066136