TSS: Rfhg 23050.1: Difference between revisions

Revision as of 06:39, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_23050.1
Species:	human
Chr:	chr2

Start:	10368563
End:	10368586
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3087023,EH38E1972696)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001258358.2:74
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	HPCAL1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-104
Nearest PromoterID:	NM_001258358
Entrez ID:	3241
Nearest Unigene:	Hs.580427
Nearest Refseq:	NM_002149
Nearest Ensembl:	ENSG00000115756
Gene Name:	HPCAL1
Gene Alias:	BDR1\|HLP2\|VILIP-3
Gene Type:	protein-coding
CpG%:	0.043478
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000115756
 |nearest_promoter_id=NM_001258358
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=10368563