TSS: Rfhg 234860.1: Difference between revisions

Revision as of 07:52, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_234860.1
Species:	human
Chr:	chrX

Start:	27807960
End:	27807960
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000356790.2:30 AK057527:30
GeneID:	139422
HGNC/MGI_ID:	HGNC:25377
UniProt_ID:	Q96LZ2
Nearer transcript ids and distances:

Gene_name:	MAGEB10
Gene_symbol:	MAGEB10
Gene_synonyms:	FLJ32965
Gene_source:	HGNC:25377

TATA-Box annotation

Distance to TSS:	-30
Nearest PromoterID:	NM_182506
Entrez ID:	139422
Nearest Unigene:	Hs.447363
Nearest Refseq:	NM_182506
Nearest Ensembl:	ENSG00000177689
Gene Name:	MAGEB10
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:25377
+|methods=TSS_database
 |nearest_ensembl=ENSG00000177689
 |nearest_promoter_id=NM_182506
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=27807960