TSS: Rfhg 2411.1: Difference between revisions

Latest revision as of 09:46, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_2411.1
Species:	human
Chr:	chr1

Start:	17755310
End:	17755388
Strand:	+

Source datasets

PRJNA615891

Protocol

TIF-seq2

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2132907,EH38E1323456)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000375406.2 AK057339 BC028909
Distance:	0
GeneID:	81569
HGNC/MGI_ID:	HGNC:24018
UniProt_ID:	Q9H568

Gene_name:	ACTL8
Gene_symbol:	ACTL8
Gene_synonyms:	CT57
Gene_source:	HGNC:24018

TATA-Box annotation

Distance to TSS:	16
Nearest PromoterID:	NM_030812
Entrez ID:	81569
Nearest Unigene:	Hs.2149
Nearest Refseq:	NM_030812
Nearest Ensembl:	ENSG00000117148
Gene Name:	ACTL8
Gene Alias:	CT57
Gene Description:	actin like 8
Gene Type:	protein-coding
CpG%:	0.089744
GC%:	0.645570
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:24018
+|methods=TIF-seq2
 |nearest_ensembl=ENSG00000117148
 |nearest_promoter_id=NM_030812
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA615891
 |species=human
 |start=17755310
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000375406.2 AK057339 BC028909
-|tss_cluster_detected=3
+|tss_cluster_detected=1
 |tss_id=rfhg_2411.1
 |tss_score=1
 |uniprot_id=Q9H568
 }}