TSS: Rfhg 24342.1: Difference between revisions
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:32483 | |hgnc_mgi_id=HGNC:32483 | ||
|methods=CAGE{{!}}TSS_database{{!}}TSS-seq{{!}}RAMPAGE{{!}}NETCAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}C1CAGE{{!}}TIF-seq2{{!}}STRIPE-seq{{!}}oligo_capping | |||
|nearest_ensembl=ENSG00000228474 | |nearest_ensembl=ENSG00000228474 | ||
|nearest_promoter_id=NM_001134693 | |nearest_promoter_id=NM_001134693 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DBTSS{{!}}DRA000914{{!}}ENCODE{{!}}RAMPAGE{{!}}PRJNA4843412{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJDB5282{{!}}DRA013844{{!}}PRJNA597322 | |||
|species=human | |species=human | ||
|start=27071608 | |start=27071608 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=ENST00000447619.5 ENST00000456793.2 ENST00000429985.1 BC105283 AL049447 | |transcript_name=ENST00000447619.5 ENST00000456793.2 ENST00000429985.1 BC105283 AL049447 | ||
|tss_cluster_detected=17 | |||
|tss_id=rfhg_24342.1 | |tss_id=rfhg_24342.1 | ||
|tss_id_v3=hg_27442.1 | |tss_id_v3=hg_27442.1 | ||
Latest revision as of 09:50, 8 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|DBTSS|DRA000914|ENCODE|RAMPAGE|PRJNA4843412 |PRJNA548673|PRJNA615891|PRJNA401781|PRJDB5282|DRA013844 |PRJNA597322 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|TSS-seq|RAMPAGE|NETCAGE|ReCappable-seq |SLIC_CAGE|C1CAGE|TIF-seq2|STRIPE-seq|oligo_capping | |||||||||||||||
| TSS cluster detected* | 17 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3101868,EH38E1982489) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_001134693 |
| Entrez ID: | 100128731 |
| Nearest Unigene: | Hs.502948 |
| Nearest Refseq: | NM_001134693 |
| Nearest Ensembl: | ENSG00000228474 |
| Gene Name: | OST4 |
| Gene Alias: | - |
| Gene Description: | oligosaccharyltransferase complex subunit 4, non-catalytic |
| Gene Type: | protein-coding |
| CpG%: | 0.113402 |
| GC%: | 0.663265 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.