TSS: Hg 102012.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.155 |distance_to_tss=516 |entrez_id=23392 |gc_percent=0.776119 |gene_alias=ECM29 |gene_description=KIAA0368 |gene_name=KIAA0368 |gene_type=protein-c...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000338205.9:-122 uc064vau.1:-122 ENST00000602978.1:167 uc064vay.1:167 AK122712:197 | |||
|chr=chr9 | |||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
|distance=-122 | |||
|distance_to_tss=516 | |distance_to_tss=516 | ||
|end=111484235 | |||
|entrez_id=23392 | |entrez_id=23392 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
|gene_alias=ECM29 | |gene_alias=ECM29 | ||
|gene_description=KIAA0368 | |gene_description=KIAA0368 | ||
|gene_id=23392 | |||
|gene_name=KIAA0368 | |gene_name=KIAA0368 | ||
|gene_source=HGNC:29020 | |||
|gene_symbol=KIAA0368 | |||
|gene_synonyms=ECM29 FLJ22036 | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:29020 | |||
|nearest_ensembl=ENSG00000136813 | |nearest_ensembl=ENSG00000136813 | ||
|nearest_promoter_id=NM_001080398 | |nearest_promoter_id=NM_001080398 | ||
|nearest_refseq=NM_001080398 | |nearest_refseq=NM_001080398 | ||
|nearest_unigene=Hs.368255 | |nearest_unigene=Hs.368255 | ||
|num_trans=5 | |||
|species=human | |||
|start=111484223 | |||
|strand=- | |||
|transcript_name=ENST00000338205.9 uc064vau.1 | |||
|tss_classification=yes | |||
|tss_id=hg_102012.1 | |tss_id=hg_102012.1 | ||
|tss_score=1 | |||
|uniprot_id=Q5VYK3 | |||
}} | }} | ||
Revision as of 19:08, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 516 |
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| Nearest PromoterID: | NM_001080398 |
| Entrez ID: | 23392 |
| Nearest Unigene: | Hs.368255 |
| Nearest Refseq: | NM_001080398 |
| Nearest Ensembl: | ENSG00000136813 |
| Gene Name: | KIAA0368 |
| Gene Alias: | ECM29 |
| Gene Description: | KIAA0368 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.