TSS: Rfhg 27375.1: Difference between revisions

Revision as of 10:46, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_27375.1
Species:	human
Chr:	chr2

Start:	64524120
End:	64524144
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3132875,EH38E2003879)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_136167.1:-11
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC101927402
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	23
Nearest PromoterID:	NR_136167
Entrez ID:	101927402
Nearest Unigene:	Hs.187018
Nearest Refseq:	NR_136167
Nearest Ensembl:	ENSG00000260101
Gene Name:	LOC101927402
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.041667
GC%:	0.440000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000260101
 |nearest_promoter_id=NR_136167
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=64524120