TSS: Rfhg 30074.1: Difference between revisions

Revision as of 11:35, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_30074.1
Species:	human
Chr:	chr2

Start:	101698254
End:	101698272
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3157475,EH38E2019989)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001384550.1:0 NM_001384559.1:0 NM_001384561.1:0 NM_001384549.1:0 NM_001384554.1:0 NM_001384558.1:0 NM_001384567.1:0 NM_001384557.1:0 NM_001384551.1:0 NM_001384564.1:0 NM_001384560.1:0 NM_001384556.1:0 NM_001384563.1:0 NM_001384562.1:0 NM_001384553.1:0 NM_001384552.1:0 NM_001384572.1:0 NM_001384555.1:0 NM_001384579.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MAP4K4
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	556
Nearest PromoterID:	NM_001242560
Entrez ID:	9448
Nearest Unigene:	Hs.701013
Nearest Refseq:	NM_004834
Nearest Ensembl:	ENSG00000071054
Gene Name:	MAP4K4
Gene Alias:	FLH21957\|HEL-S-31\|HGK\|MEKKK4\|NIK
Gene Type:	protein-coding
CpG%:	0.055556
GC%:	0.631579
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000071054
 |nearest_promoter_id=NM_001242560
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=101698254