TSS: Rfhg 31206.1: Difference between revisions

Revision as of 11:54, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_31206.1
Species:	human
Chr:	chr2

Start:	115161835
End:	115161835
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D3167294,EH38E2026576)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001178034.1:101
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	DPP10
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-98
Nearest PromoterID:	NM_001321914
Entrez ID:	57628
Nearest Unigene:	Hs.580539
Nearest Refseq:	NM_020868
Nearest Ensembl:	ENSG00000175497
Gene Name:	DPP10
Gene Alias:	DPL2\|DPPY\|DPRP-3\|DPRP3
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=TSS_database
 |nearest_ensembl=ENSG00000175497
 |nearest_promoter_id=NM_001321914
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=115161835