TSS: Rfhg 38264.1: Difference between revisions

Revision as of 14:03, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_38264.1
Species:	human
Chr:	chr2

Start:	213284198
End:	213284221
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3240841,EH38E2072207)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000360083.3:0 AK124960:0
GeneID:	100130451
HGNC/MGI_ID:	HGNC:52674
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SPAG16-DT
Gene_symbol:	SPAG16-DT
Gene_synonyms:
Gene_source:	HGNC:52674

TATA-Box annotation

Distance to TSS:	0
Nearest PromoterID:	NR_144752
Entrez ID:	100130451
Nearest Unigene:	Hs.608433
Nearest Refseq:	NR_144752
Nearest Ensembl:
Gene Name:	SPAG16-DT
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.416667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:52674
+|methods=CAGE
 |nearest_ensembl=
 |nearest_promoter_id=NR_144752
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=213284198