TSS: Rfhg 40890.1: Difference between revisions

Revision as of 14:51, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_40890.1
Species:	human
Chr:	chr2

Start:	237359239
End:	237359250
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3262619,EH38E2087275)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF319000:0 MA554577:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	COL6A3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	54920
Nearest PromoterID:	NM_057164
Entrez ID:	1293
Nearest Unigene:	Hs.233240
Nearest Refseq:	NM_004369
Nearest Ensembl:	ENSG00000163359
Gene Name:	COL6A3
Gene Alias:	BTHLM1\|DYT27\|UCMD1
Gene Type:	protein-coding
CpG%:	0.090909
GC%:	0.583333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000163359
 |nearest_promoter_id=NM_057164
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=237359239