TSS: Hg 102031.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=30858 |entrez_id=158401 |gc_percent=0.373134 |gene_alias=- |gene_description=chromosome 9 open reading frame 84 |gene_name=C9orf84...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance= | |||
|distance_to_tss=30858 | |distance_to_tss=30858 | ||
|end=111728682 | |||
|entrez_id=158401 | |entrez_id=158401 | ||
|gc_percent=0.373134 | |gc_percent=0.373134 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NM_173521 | |nearest_refseq=NM_173521 | ||
|nearest_unigene=Hs.428209 | |nearest_unigene=Hs.428209 | ||
|num_trans=0 | |||
|species=human | |||
|start=111728668 | |||
|strand=- | |||
|tata_box="45(CCTTTTCTGGAC,+,0.00)" | |tata_box="45(CCTTTTCTGGAC,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_102031.1 | |tss_id=hg_102031.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:09, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 30858 |
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| Nearest PromoterID: | NM_001080551 |
| Entrez ID: | 158401 |
| Nearest Unigene: | Hs.428209 |
| Nearest Refseq: | NM_173521 |
| Nearest Ensembl: | ENSG00000165181 |
| Gene Name: | C9orf84 |
| Gene Alias: | - |
| Gene Description: | chromosome 9 open reading frame 84 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.373134 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "45(CCTTTTCTGGAC,+,0.00)" |