TSS: Rfhg 48031.1: Difference between revisions
From referenceTSS
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|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:48573 | |hgnc_mgi_id=HGNC:48573 | ||
|methods=NETCAGE{{!}}CAGE | |||
|nearest_ensembl=ENSG00000256628 | |nearest_ensembl=ENSG00000256628 | ||
|nearest_promoter_id=NR_024407 | |nearest_promoter_id=NR_024407 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start=101676437 | |start=101676437 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=ENST00000609682.1 AK022880 BC016930 | |transcript_name=ENST00000609682.1 AK022880 BC016930 | ||
|tss_cluster_detected= | |tss_cluster_detected=2 | ||
|tss_id=rfhg_48031.1 | |tss_id=rfhg_48031.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} |
Latest revision as of 17:03, 8 December 2023
Basic information about the TSS
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Source datasets | PRJNA4843412|DRA013844 | |||||||||||||
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Protocol | NETCAGE|CAGE | |||||||||||||
TSS cluster detected* | 2 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D3461320,EH38E2222500) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 31 |
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Nearest PromoterID: | NR_024407 |
Entrez ID: | 100009676 |
Nearest Unigene: | Hs.743292 |
Nearest Refseq: | NR_024407 |
Nearest Ensembl: | ENSG00000256628 |
Gene Name: | ZBTB11-AS1 |
Gene Alias: | - |
Gene Description: | ZBTB11 antisense RNA 1 |
Gene Type: | ncRNA |
CpG%: | 0.102041 |
GC%: | 0.740000 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.