TSS: Rfhg 50673.1: Difference between revisions
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:11193 | |hgnc_mgi_id=HGNC:11193 | ||
|methods=CAGE{{!}}TSS_database | |||
|nearest_ensembl=ENSG00000168875 | |nearest_ensembl=ENSG00000168875 | ||
|nearest_promoter_id=NM_004189 | |nearest_promoter_id=NM_004189 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=human | |species=human | ||
|start=137764300 | |start=137764300 | ||
Latest revision as of 17:52, 8 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3490194,EH38E2241535) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_004189 |
| Entrez ID: | 8403 |
| Nearest Unigene: | Hs.248184 |
| Nearest Refseq: | NM_004189 |
| Nearest Ensembl: | ENSG00000168875 |
| Gene Name: | SOX14 |
| Gene Alias: | SOX28 |
| Gene Description: | SRY-box transcription factor 14 |
| Gene Type: | protein-coding |
| CpG%: | 0.050000 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.