TSS: Rfhg 50697.1: Difference between revisions

Revision as of 17:52, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_50697.1
Species:	human
Chr:	chr3

Start:	138132379
End:	138132394
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000236709.4:0 AK225668:0
GeneID:	51146
HGNC/MGI_ID:	HGNC:17968
UniProt_ID:	Q9UNA3
Nearer transcript ids and distances:

Gene_name:	A4GNT
Gene_symbol:	A4GNT
Gene_synonyms:	alpha4GnT
Gene_source:	HGNC:17968

TATA-Box annotation

Distance to TSS:	4
Nearest PromoterID:	NM_016161
Entrez ID:	51146
Nearest Unigene:	Hs.278960
Nearest Refseq:	NM_016161
Nearest Ensembl:	ENSG00000118017
Gene Name:	A4GNT
Gene Alias:	alpha4GnT
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.312500
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:17968
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000118017
 |nearest_promoter_id=NM_016161
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=138132379