TSS: Rfhg 50809.1: Difference between revisions

Revision as of 17:55, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_50809.1
Species:	human
Chr:	chr3

Start:	139389777
End:	139389787
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3491516,EH38E2242450)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000662234.1:0
GeneID:	100507291
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC100507291
Gene_symbol:	COPB2-DT
Gene_synonyms:
Gene_source:	EntrezGene:100507291

TATA-Box annotation

Distance to TSS:	-21
Nearest PromoterID:	NR_121608
Entrez ID:	100507291
Nearest Unigene:	Hs.97661
Nearest Refseq:	NR_121608
Nearest Ensembl:	ENSG00000248932
Gene Name:	LOC100507291
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.545455
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000248932
 |nearest_promoter_id=NR_121608
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=139389777