TSS: Rfhg 53332.1: Difference between revisions

Latest revision as of 18:42, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_53332.1
Species:	human
Chr:	chr3

Start:	181741417
End:	181741420
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:
Distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:

Gene_name:	SOX2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	29493
Nearest PromoterID:	NM_003106
Entrez ID:	6657
Nearest Unigene:	Hs.518438
Nearest Refseq:	NM_003106
Nearest Ensembl:	ENSG00000181449
Gene Name:	SOX2
Gene Alias:	ANOP3\|MCOPS3
Gene Description:	SRY-box transcription factor 2
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.250000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000181449
 |nearest_promoter_id=NM_003106
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=181741417