TSS: Rfhg 55657.1: Difference between revisions

Revision as of 19:25, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_55657.1
Species:	human
Chr:	chr4

Start:	4859659
End:	4859671
Strand:	+

Source datasets

DRA013844|PRJNA615891

Protocol

CAGE|SLIC_CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3543645,EH38E2277333)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000382723.5:0 AK290636:0
GeneID:	4487
HGNC/MGI_ID:	HGNC:7391
UniProt_ID:	P28360
Nearer transcript ids and distances:

Gene_name:	MSX1
Gene_symbol:	MSX1
Gene_synonyms:	HYD1 OFC5
Gene_source:	HGNC:7391

TATA-Box annotation

Distance to TSS:	0
Nearest PromoterID:	NM_002448
Entrez ID:	4487
Nearest Unigene:	Hs.424414
Nearest Refseq:	NM_002448
Nearest Ensembl:	ENSG00000163132
Gene Name:	MSX1
Gene Alias:	ECTD3\|HOX7\|HYD1\|STHAG1
Gene Type:	protein-coding
CpG%:	0.166667
GC%:	0.846154
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:7391
+|methods=CAGE{{!}}SLIC_CAGE
 |nearest_ensembl=ENSG00000163132
 |nearest_promoter_id=NM_002448
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=DRA013844{{!}}PRJNA615891
 |species=human
 |start=4859659
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000382723.5 AK290636
-|tss_cluster_detected=5
+|tss_cluster_detected=2
 |tss_id=rfhg_55657.1
 |tss_score=1
 |uniprot_id=P28360
 }}