TSS: Rfhg 62130.1: Difference between revisions

Revision as of 21:27, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_62130.1
Species:	human
Chr:	chr4

Start:	133149096
End:	133149122
Strand:	-

Source datasets

PRJNA401781|PRJNA548673

Protocol

RAMPAGE|CAGE|ReCappable-seq

TSS cluster detected^*

4

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3628758,EH38E2328027)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC040219:0
GeneID:	101927359
HGNC/MGI_ID:	HGNC:53036
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC101927359
Gene_symbol:	PCDH10-DT
Gene_synonyms:
Gene_source:	HGNC:53036

TATA-Box annotation

Distance to TSS:	7
Nearest PromoterID:	NR_125885
Entrez ID:	101927359
Nearest Unigene:	Hs.649960
Nearest Refseq:	NR_125885
Nearest Ensembl:	ENSG00000250241
Gene Name:	LOC101927359
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.038462
GC%:	0.555556
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:53036
+|methods=RAMPAGE{{!}}CAGE{{!}}ReCappable-seq
 |nearest_ensembl=ENSG00000250241
 |nearest_promoter_id=NR_125885
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA401781{{!}}PRJNA548673
 |species=human
 |start=133149096
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=BC040219
-|tss_cluster_detected=5
+|tss_cluster_detected=4
 |tss_id=rfhg_62130.1
 |tss_score=1
 |uniprot_id=
 }}