TSS: Rfhg 64028.1: Difference between revisions

Revision as of 22:02, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_64028.1
Species:	human
Chr:	chr4

Start:	168631505
End:	168631518
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3653257,EH38E2342587)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001166109.2:60
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PALLD
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-67
Nearest PromoterID:	NM_001166109
Entrez ID:	23022
Nearest Unigene:	Hs.151220
Nearest Refseq:	NM_016081
Nearest Ensembl:	ENSG00000129116
Gene Name:	PALLD
Gene Alias:	CGI-151\|CGI151\|MYN\|PNCA1\|SIH002
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.285714
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000129116
 |nearest_promoter_id=NM_001166109
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=168631505