TSS: Rfhg 65299.1: Difference between revisions
From referenceTSS
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|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE{{!}}oligo_capping | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_104613 | |nearest_promoter_id=NR_104613 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA401781 | |||
|species=human | |species=human | ||
|start=271476 | |start=271476 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=ENST00000512642.1 | |transcript_name=ENST00000512642.1 | ||
|tss_cluster_detected= | |tss_cluster_detected=2 | ||
|tss_id=rfhg_65299.1 | |tss_id=rfhg_65299.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 22:26, 8 December 2023
Basic information about the TSS
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| Source datasets | PRJNA401781 | |||||||||||||
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| Protocol | CAGE|oligo_capping | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3668587,EH38E2351842) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 35 |
|---|---|
| Nearest PromoterID: | NR_104613 |
| Entrez ID: | 102467073 |
| Nearest Unigene: | Hs.368328 |
| Nearest Refseq: | NR_104613 |
| Nearest Ensembl: | |
| Gene Name: | HRAT5 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.037037 |
| GC%: | 0.714286 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |