TSS: Rfhg 70202.1: Difference between revisions

Revision as of 23:56, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_70202.1
TSS ID(Version3):	hg_62653.1 hg_62652.1
Species:	human
Chr:	chr5

Start:	95732079
End:	95732134
Strand:	-

Source datasets

FANTOM5|PRJNA401781|PRJNA597322

Protocol

CAGE|oligo_capping|STRIPE-seq

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3733327,EH38E2392505)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001349303.2:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SPATA9
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-4
Nearest PromoterID:	NM_001349303
Entrez ID:	83890
Nearest Unigene:	Hs.50499
Nearest Refseq:	NM_031952
Nearest Ensembl:	ENSG00000145757
Gene Name:	SPATA9
Gene Alias:	NYD-SP16
Gene Type:	protein-coding
CpG%:	0.036364
GC%:	0.553571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}oligo_capping{{!}}STRIPE-seq
 |nearest_ensembl=ENSG00000145757
 |nearest_promoter_id=NM_001349303
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA401781{{!}}PRJNA597322
 |species=human
 |start=95732079
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=NM_001349303.2
+|tss_cluster_detected=3
 |tss_id=rfhg_70202.1
 |tss_id_v3=hg_62653.1;hg_62652.1