TSS: Rfhg 72005.1: Difference between revisions

Revision as of 00:31, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_72005.1
Species:	human
Chr:	chr5

Start:	132873662
End:	132873674
Strand:	+

Source datasets

FANTOM5|EPD|ENCODE|RAMPAGE

Protocol

CAGE|TSS_database|RAMPAGE

TSS cluster detected^*

4

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3760110,EH38E2408922)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000485457.1:0 ENST00000296877.3:0 AJ306405:0 AY052782:0 BC070199:0
GeneID:	116842
HGNC/MGI_ID:	HGNC:29571
UniProt_ID:	Q7Z5F5 Q969E1
Nearer transcript ids and distances:

Gene_name:	LEAP2
Gene_symbol:	LEAP2
Gene_synonyms:	LEAP-2
Gene_source:	HGNC:29571

TATA-Box annotation

Distance to TSS:	0
Nearest PromoterID:	NM_052971
Entrez ID:	116842
Nearest Unigene:	Hs.337588
Nearest Refseq:	NM_052971
Nearest Ensembl:	ENSG00000164406
Gene Name:	LEAP2
Gene Alias:	LEAP-2
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.615385
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:29571
+|methods=CAGE{{!}}TSS_database{{!}}RAMPAGE
 |nearest_ensembl=ENSG00000164406
 |nearest_promoter_id=NM_052971
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}ENCODE{{!}}RAMPAGE
 |species=human
 |start=132873662