TSS: Rfhg 74677.1: Difference between revisions

Revision as of 01:19, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_74677.1
Species:	human
Chr:	chr5

Start:	154320633
End:	154320666
Strand:	+

Source datasets

PRJNA4843412

Protocol

NETCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3779609,EH38E2423061)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MIR1294
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-26457
Nearest PromoterID:	NR_031626
Entrez ID:	100302181
Nearest Unigene:
Nearest Refseq:	NR_031626
Nearest Ensembl:	ENSG00000221430
Gene Name:	MIR1294
Gene Alias:	MIRN1294\|hsa-mir-1294\|mir-1294
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.352941
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=NETCAGE
 |nearest_ensembl=ENSG00000221430
 |nearest_promoter_id=NR_031626
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412
 |species=human
 |start=154320633